Domain ID e2ibmB5

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  • A: alpha complex topology
  • X: Helical scaffold and wing domains of SecA
  • H: Helical scaffold and wing domains of SecA
  • T: Helical scaffold and wing domains of SecA
  • F: SecA_SW
UID: 001233899
Type: Automatic domain
Parent: e1tf5A2
Range: B:571-780
PDB: 2ibm
PDB Description: PREPROTEIN TRANSLOCASE SECA SUBUNIT
UniProt: P28366
Species: Bacillus subtilis

Structure of domain e2ibmB5

Domains in the same chain:

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e2ibmB8 B:11-226,B:348-395 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmB7 B:227-348 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ibmB6 B:396-570 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmB5 B:571-780 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA

Domains in the same PDB:

e2ibmA12 A:1-220,A:343-389 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmA10 A:221-342 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ibmA9 A:390-564 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmA11 A:565-780 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA
e2ibmB8 B:11-226,B:348-395 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmB7 B:227-348 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ibmB6 B:396-570 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmB5 B:571-780 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA

Structural contacts of domain e2ibmB5 of H-group "Helical scaffold and wing domains of SecA":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ibmA9 B:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2ibmA12 B:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2ibmA11 B:x,y,z->A:X,Y,Z Helical scaffold and wing domains of SecA Interaction Interface Pymol
e2ibmA10 B:x,y,z->A:X,Y,Z Pre-protein crosslinking domain of SecA Interaction Interface Pymol
e2ibmB5 B:x,y,z->B:-X-1/2,Y,-Z Helical scaffold and wing domains of SecA Interaction Interface Pymol
e2ibmB7 B:x,y,z->B:-X-1/2,Y,-Z Pre-protein crosslinking domain of SecA Interaction Interface Pymol
e2ibmB7 B:-X-1/2,Y,-Z->B:x,y,z Pre-protein crosslinking domain of SecA Interaction Interface Pymol
e2ibmB5 B:-X-1/2,Y,-Z->B:x,y,z Helical scaffold and wing domains of SecA Interaction Interface Pymol
e2ibmA12 B:x,y,z->A:-X-1/2,Y,-Z P-loop domains-related Interaction Interface Pymol
e2ibmA9 B:x,y,z->A:X-1/2,-Y-1/2,-Z P-loop domains-related Interaction Interface Pymol