Domain ID e2ipcD4

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: P-loop_SecA
UID: 000957918
Type: Automatic domain
Parent: e1tf5A4
Range: D:405-723
PDB: 2ipc
PDB Description: Preprotein translocase SecA subunit
UniProt: Q5SIW3
Species:

Structure of domain e2ipcD4

Domains in the same chain:

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e2ipcD3 D:1-223,D:357-404 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcD1 D:224-356 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ipcD4 D:405-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcD2 D:724-934 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA

Domains in the same PDB:

e2ipcA1 A:1-228,A:362-409 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcA4 A:229-361 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ipcA3 A:410-728 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcA2 A:729-939 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA
e2ipcB3 B:1-223,B:357-404 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcB1 B:224-356 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ipcB4 B:405-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcB2 B:724-934 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA
e2ipcC3 C:1-228,C:362-409 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcC1 C:229-361 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ipcC4 C:410-728 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcC2 C:729-939 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA
e2ipcD3 D:1-223,D:357-404 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcD1 D:224-356 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ipcD4 D:405-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ipcD2 D:724-934 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA

Structural contacts of domain e2ipcD4 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ipcC2 D:x,y,z->C:X,Y,Z Helical scaffold and wing domains of SecA Interaction Interface Pymol
e2ipcC3 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2ipcC4 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2ipcD1 D:x,y,z->D:-Y+1,X-Y+1,Z-1/3 Pre-protein crosslinking domain of SecA Interaction Interface Pymol
e2ipcD3 D:x,y,z->D:-Y+1,X-Y+1,Z-1/3 P-loop domains-related Interaction Interface Pymol
e2ipcD4 D:x,y,z->D:-Y+1,X-Y+1,Z-1/3 P-loop domains-related Interaction Interface Pymol
e2ipcD4 D:-Y+1,X-Y+1,Z-1/3->D:x,y,z P-loop domains-related Interaction Interface Pymol
e2ipcC4 D:-Y+1,X-Y+1,Z-1/3->C:x,y,z P-loop domains-related Interaction Interface Pymol
e2ipcB3 D:x,y,z->B:-Y+1,X-Y+1,Z-1/3 P-loop domains-related Interaction Interface Pymol
e2ipcA4 D:x,y,z->A:X,Y,Z Pre-protein crosslinking domain of SecA Interaction Interface Pymol
e2ipcD1 D:-Y+1,X-Y+1,Z+2/3->D:x,y,z Pre-protein crosslinking domain of SecA Interaction Interface Pymol