| UID: | 001308316 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1rxwA1 |
| Range: | A:218-346 |
| Ligands: | MG |
| PDB: | 2izo |
| PDB Description: | FLAP STRUCTURE-SPECIFIC ENDONUCLEASE |
| UniProt: | Q980U8 |
| Hsap BLAST neighbor: | P39748 |
| Species: | Sulfolobus solfataricus |
Structure of domain e2izoA2
Domains in the same chain:
| e2izoA1 | A:1-78,A:125-217 | HAD domain-like | HAD domain-related | PIN domain-like |
| e2izoA2 | A:218-346 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Domains in the same PDB:
| e2izoA1 | A:1-78,A:125-217 | HAD domain-like | HAD domain-related | PIN domain-like |
| e2izoA2 | A:218-346 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2izoB1 | B:1-115 | DNA clamp | DNA clamp | DNA clamp |
| e2izoB2 | B:116-245 | DNA clamp | DNA clamp | DNA clamp |
| e2izoC1 | C:1-118 | DNA clamp | DNA clamp | DNA clamp |
| e2izoC2 | C:119-249 | DNA clamp | DNA clamp | DNA clamp |
Structural contacts of domain e2izoA2 of H-group "SAM/DNA-glycosylase":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2izoC2 | A:X,Y,Z->C:x,y,z | DNA clamp | Interaction Interface Pymol |
| e2izoC1 | A:X,Y,Z->C:x,y,z | DNA clamp | Interaction Interface Pymol |
| e2izoB1 | A:x,y,z->B:X-1/2,-Y-1/2,-Z | DNA clamp | Interaction Interface Pymol |
| e2izoB2 | A:x,y,z->B:X-1/2,-Y-1/2,-Z | DNA clamp | Interaction Interface Pymol |
| e2izoB2 | A:-X+1/2,-Y,Z-1/2->B:x,y,z | DNA clamp | Interaction Interface Pymol |
| e2izoC1 | A:-X-1/2,-Y,Z-1/2->C:x,y,z | DNA clamp | Interaction Interface Pymol |
| e2izoC2 | A:x,y,z->C:X-1/2,-Y-1/2,-Z | DNA clamp | Interaction Interface Pymol |
