ECOD: domain e2izoC2

Domain ID e2izoC2

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: Unmapped domains

UID:	000305796
Type:	Automatic domain
Parent:	e1iz5A2
Range:	C:119-249
Ligands:	ZN
PDB:	2izo
PDB Description:	DNA POLYMERASE SLIDING CLAMP B
UniProt:	P57766
Species:	Sulfolobus solfataricus

Domains in the same chain:

Download Pymol

e2izoC1	C:1-118	DNA clamp	DNA clamp	DNA clamp
e2izoC2	C:119-249	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e2izoA1	A:1-78,A:125-217	HAD domain-like	HAD domain-related	PIN domain-like
e2izoA2	A:218-346	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2izoB1	B:1-115	DNA clamp	DNA clamp	DNA clamp
e2izoB2	B:116-245	DNA clamp	DNA clamp	DNA clamp
e2izoC1	C:1-118	DNA clamp	DNA clamp	DNA clamp
e2izoC2	C:119-249	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e2izoC2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2izoA2	C:x,y,z->A:X,Y,Z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2izoB1	C:x,y,z->B:X,Y,Z	DNA clamp	Interaction Interface Pymol
e2izoB1	C:x,y,z->B:X-1/2,-Y+1/2,-Z	DNA clamp	Interaction Interface Pymol
e2izoB2	C:x,y,z->B:X-1/2,-Y+1/2,-Z	DNA clamp	Interaction Interface Pymol
e2izoC1	C:-X-1/2,-Y,Z-1/2->C:x,y,z	DNA clamp	Interaction Interface Pymol
e2izoA1	C:x,y,z->A:X-1/2,-Y-1/2,-Z	HAD domain-related	Interaction Interface Pymol
e2izoA2	C:X-1/2,-Y-1/2,-Z->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol