ECOD: domain e2ja5I2

Domain ID e2ja5I2

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: TFIIS_C

UID:	000088726
Type:	Automatic domain
Parent:	e1tfiA1
Range:	I:50-117
Ligands:	ZN
PDB:	2ja5
PDB Description:	DNA-directed RNA polymerase II subunit RPB9
UniProt:	P27999
Hsap BLAST neighbor:	P36954
Species:

Domains in the same chain:

Download Pymol

e2ja5I1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2ja5I2	I:50-117	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Domains in the same PDB:

Structural contacts of domain e2ja5I2 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ja5A7	I:x,y,z->A:X,Y,Z	second helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e2ja5B7	I:x,y,z->B:X,Y,Z	insertion domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e2ja5B6	I:x,y,z->B:X,Y,Z	barrel domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e2ja5B5	I:x,y,z->B:X,Y,Z	inserted a+b domain in yeast RNA polymerase beta subunit	Interaction Interface Pymol

e2ja5A6	A:2-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2ja5A5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e2ja5A1	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e2ja5A9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2ja5A7	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2ja5A2	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e2ja5A3	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2ja5A4	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2ja5A8	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2ja5B1	B:18-70,B:90-133,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2ja5B7	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2ja5B5	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e2ja5B6	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2ja5B3	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e2ja5B4	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2ja5B2	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2ja5C1	C:3-37,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2ja5C2	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2ja5D1	D:4-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2ja5E2	E:5-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e2ja5E1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e2ja5F1	F:72-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e2ja5G2	G:1-80	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2ja5G1	G:81-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2ja5H1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2ja5I1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2ja5I2	I:50-117	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2ja5J1	J:1-65	HTH	RPB10	RPB10
e2ja5K1	K:1-114	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2ja5L1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related