ECOD: domain e2ja7B2

Domain ID e2ja7B2

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: double psi
F: RNA_pol_Rpb2_6

UID:	001509888
Type:	Automatic domain
Parent:	e1twfB1
Range:	B:814-850,B:975-1097
PDB:	2ja7
PDB Description:	DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE
UniProt:	P08518
Hsap BLAST neighbor:	P30876
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e2ja7B1	B:18-70,B:90-133,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2ja7B5	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2ja7B6	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e2ja7B4	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2ja7B2	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e2ja7B7	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2ja7B3	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

Structural contacts of domain e2ja7B2 of H-group "RIFT-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ja7A5	B:x,y,z->A:X,Y,Z	RIFT-related	Interaction Interface Pymol
e2ja7A7	B:x,y,z->A:X,Y,Z	second helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e2ja7A9	B:x,y,z->A:X,Y,Z	first helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e2ja7C2	B:X,Y,Z->C:x,y,z	Insert subdomain of RNA polymerase alpha subunit	Interaction Interface Pymol
e2ja7C1	B:X,Y,Z->C:x,y,z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol
e2ja7J1	B:X,Y,Z->J:x,y,z	RPB10	Interaction Interface Pymol
e2ja7K1	B:X,Y,Z->K:x,y,z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol

e2ja7A6	A:2-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2ja7A5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e2ja7A1	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e2ja7A9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2ja7A7	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2ja7A2	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e2ja7A3	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2ja7A4	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2ja7A8	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2ja7B1	B:18-70,B:90-133,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2ja7B5	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2ja7B6	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e2ja7B4	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2ja7B2	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e2ja7B7	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2ja7B3	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2ja7C1	C:3-37,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2ja7C2	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2ja7D1	D:4-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2ja7E2	E:5-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e2ja7E1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e2ja7F1	F:72-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e2ja7G2	G:1-80	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2ja7G1	G:81-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2ja7H1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2ja7I1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2ja7I2	I:50-117	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2ja7J1	J:1-65	HTH	RPB10	RPB10
e2ja7K1	K:1-114	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2ja7L1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2ja7M6	M:2-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2ja7M5	M:337-374,M:436-519	cradle loop barrel	RIFT-related	double psi
e2ja7M1	M:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e2ja7M9	M:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2ja7M7	M:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2ja7M2	M:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e2ja7M3	M:1060-1102,M:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2ja7M4	M:1103-1131,M:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2ja7M8	M:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2ja7N4	N:18-70,N:90-133,N:164-218,N:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2ja7N3	N:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2ja7N1	N:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e2ja7N7	N:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2ja7N6	N:814-850,N:975-1097	cradle loop barrel	RIFT-related	double psi
e2ja7N5	N:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2ja7N2	N:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2ja7O1	O:3-37,O:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2ja7O2	O:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2ja7P1	P:4-71,P:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2ja7Q2	Q:5-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e2ja7Q1	Q:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e2ja7R1	R:72-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e2ja7S2	S:1-80	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2ja7S1	S:81-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2ja7T1	T:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2ja7U1	U:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2ja7U2	U:50-117	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2ja7V1	V:1-65	HTH	RPB10	RPB10
e2ja7W1	W:1-114	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2ja7X1	X:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related