Domain ID e2npfA5

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: GTP_EFTU
UID: 000101620
Type: Automatic domain
Parent: e2c78A3
Range: A:3-343
Ligands: GDP
PDB: 2npf
PDB Description: Elongation factor 2
UniProt: P32324
Hsap BLAST neighbor: P13639
Species: Saccharomyces cerevisiae

Structure of domain e2npfA5

Domains in the same chain:

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e2npfA5 A:3-343 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2npfA1 A:344-481 cradle loop barrel RIFT-related Alanine racemase-C
e2npfA2 A:482-560 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e2npfA4 A:561-725 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2npfA3 A:726-842 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Domains in the same PDB:

e2npfA5 A:3-343 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2npfA1 A:344-481 cradle loop barrel RIFT-related Alanine racemase-C
e2npfA2 A:482-560 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e2npfA4 A:561-725 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2npfA3 A:726-842 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e2npfB5 B:3-343 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2npfB1 B:344-481 cradle loop barrel RIFT-related Alanine racemase-C
e2npfB2 B:482-560 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e2npfB4 B:561-725 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2npfB3 B:726-842 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e2npfA5 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2npfA4 A:X-1,Y,Z->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2npfA3 A:X-1,Y,Z->A:x,y,z EF-G C-terminal domain-like Interaction Interface Pymol
e2npfA4 A:x,y,z->A:-X+1,Y-1/2,-Z+1 Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2npfA3 A:x,y,z->A:-X+1,Y-1/2,-Z+1 EF-G C-terminal domain-like Interaction Interface Pymol
e2npfB2 A:X-1,Y,Z->B:x,y,z EF-G C-terminal domain-like Interaction Interface Pymol
e2npfB5 A:x,y,z->B:-X+1,Y-1/2,-Z+2 P-loop domains-related Interaction Interface Pymol