| UID: | 000333256 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1iz5A1 |
| Range: | D:1-118 |
| Ligands: | BR |
| PDB: | 2nti |
| PDB Description: | DNA polymerase sliding clamp B |
| UniProt: | P57766 |
| Species: |
Structure of domain e2ntiD1
Domains in the same chain:
| e2ntiD1 | D:1-118 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiD2 | D:119-249 | DNA clamp | DNA clamp | DNA clamp |
Domains in the same PDB:
| e2ntiA1 | A:1-118 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiA2 | A:119-248 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiB1 | B:1-115 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiB2 | B:116-245 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiC1 | C:1-121 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiC2 | C:122-244 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiD1 | D:1-118 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiD2 | D:119-249 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiE1 | E:1-115 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiE2 | E:116-246 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiF1 | F:1-121 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiF2 | F:122-244 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiG1 | G:1-118 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiG2 | G:119-249 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiH1 | H:1-115 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiH2 | H:116-246 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiI1 | I:1-121 | DNA clamp | DNA clamp | DNA clamp |
| e2ntiI2 | I:125-244 | DNA clamp | DNA clamp | DNA clamp |
Structural contacts of domain e2ntiD1 of H-group "DNA clamp":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2ntiF2 | D:X,Y,Z->F:x,y,z | DNA clamp | Interaction Interface Pymol |
| e2ntiF1 | D:x,y,z->F:X,Y,Z-1 | DNA clamp | Interaction Interface Pymol |
| e2ntiA1 | D:x,y,z->A:X,Y,Z | DNA clamp | Interaction Interface Pymol |
| e2ntiA2 | D:x,y,z->A:X,Y,Z | DNA clamp | Interaction Interface Pymol |
| e2ntiC2 | D:x,y,z->C:X-1/2,-Y+1/2,-Z | DNA clamp | Interaction Interface Pymol |
| e2ntiG1 | D:x,y,z->G:X-1/2,-Y+1/2,-Z+1 | DNA clamp | Interaction Interface Pymol |
