ECOD: domain e2nupB2

Domain ID e2nupB2

A: a/b three-layered sandwiches
X: HAD domain-like
H: HAD domain-related
T: vWA-like
F: Sec23_trunk

UID:	001659513
Type:	Automatic domain
Parent:	e1pd0A5
Range:	B:501-743
PDB:	2nup
PDB Description:	Protein transport protein Sec24A
UniProt:	O95486
Hsap BLAST neighbor:	O95486
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2nupB2

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e2nupA4	A:3-50,A:394-517	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e2nupA5	A:51-122	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2nupA1	A:123-393	HAD domain-like	HAD domain-related	vWA-like
e2nupA2	A:518-620	ERP29 C domain-like	Helical domain of Sec23/24	Helical domain of Sec23/24
e2nupA3	A:621-723,A:746-764	Gelsolin-like	Gelsolin-like	Gelsolin-like
e2nupB1	B:346-415,B:744-838	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e2nupB4	B:416-500	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2nupB2	B:501-743	HAD domain-like	HAD domain-related	vWA-like
e2nupB5	B:839-943	ERP29 C domain-like	Helical domain of Sec23/24	Helical domain of Sec23/24
e2nupB3	B:944-1093	Gelsolin-like	Gelsolin-like	Gelsolin-like
e2nupC1	C:1-157	Profilin-like	profilin-like	profilin-like

Structural contacts of domain e2nupB2 of H-group "HAD domain-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2nupA1	B:x,y,z->A:X,Y,Z	HAD domain-related	Interaction Interface Pymol
e2nupC1	B:X,Y,Z->C:x,y,z	profilin-like	Interaction Interface Pymol
e2nupA4	B:x,y,z->A:-X,Y-1,-Z	Immunoglobulin-related	Interaction Interface Pymol
e2nupA3	B:x,y,z->A:-X,Y-1,-Z	Gelsolin-like	Interaction Interface Pymol
e2nupA2	B:x,y,z->A:-X,Y-1,-Z	Helical domain of Sec23/24	Interaction Interface Pymol