Domain ID e2nvuB2

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Activating enzymes of the ubiquitin-like proteins
  • F: ThiF
UID: 001870428
Type: Manual and representative domain
Range: B:2012-2210,B:2289-2346
Ligands: ATP MG ZN
DrugDomain: DB00171
PDB: 2nvu
PDB Description: Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera
UniProt: Q8TBC4
Hsap BLAST neighbor: Q8TBC4
Species: Homo sapiens

Structure of domain e2nvuB2

Domains in the same chain:

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e2nvuB4 B:1002-1114,B:1263-1370 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e2nvuB3 B:1112-1262 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e2nvuB2 B:2012-2210,B:2289-2346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e2nvuB5 B:2211-2288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e2nvuB1 B:2347-2441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Domains in the same PDB:

e2nvuA1 A:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e2nvuB4 B:1002-1114,B:1263-1370 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e2nvuB3 B:1112-1262 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e2nvuB2 B:2012-2210,B:2289-2346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e2nvuB5 B:2211-2288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e2nvuB1 B:2347-2441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e2nvuC1 C:27-183 UBC-like UBC-like UBC-like
e2nvuI1 I:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e2nvuJ1 J:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e2nvuB2 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2nvuA1 B:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e2nvuC1 B:X,Y,Z->C:x,y,z UBC-like Interaction Interface Pymol
e2nvuI1 B:X,Y,Z->I:x,y,z Ubiquitin-related Interaction Interface Pymol
e2nvuA1 B:-Y,X-Y-1,Z-1/3->A:x,y,z Rossmann-related Interaction Interface Pymol
e2nvuA1 B:Y,X-1,-Z->A:x,y,z Rossmann-related Interaction Interface Pymol