ECOD: domain e2nvuJ1

Domain ID e2nvuJ1

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: ubiquitin

UID:	000072138
Type:	Automatic domain
Parent:	e1v5oA1
Range:	J:1-76
PDB:	2nvu
PDB Description:	NEDD8
UniProt:	Q15843
Hsap BLAST neighbor:	Q15843
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2nvuJ1

Domains in the same chain:

Download Pymol

e2nvuJ1	J:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e2nvuA1	A:6-534	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e2nvuB4	B:1002-1114,B:1263-1370	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e2nvuB3	B:1112-1262	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e2nvuB2	B:2012-2210,B:2289-2346	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e2nvuB5	B:2211-2288	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e2nvuB1	B:2347-2441	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e2nvuC1	C:27-183	UBC-like	UBC-like	UBC-like
e2nvuI1	I:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2nvuJ1	J:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e2nvuJ1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2nvuA1	J:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e2nvuC1	J:x,y,z->C:X,Y,Z	UBC-like	Interaction Interface Pymol
e2nvuB5	J:x,y,z->B:X,Y,Z	Catalytic cysteine domain in ubiquitin-activating enzyme	Interaction Interface Pymol