ECOD: domain e2o8dB2

Domain ID e2o8dB2

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: MutS_II

UID:	001814102
Type:	Automatic domain
Parent:	e1ewqA4
Range:	B:522-740
PDB:	2o8d
PDB Description:	DNA MISMATCH REPAIR PROTEIN MSH6
UniProt:	P52701
Hsap BLAST neighbor:	P52701
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2o8dB2

Domains in the same chain:

Download Pymol

e2o8dB1	B:362-521	Homing endonucleases-like	DNA repair protein MutS, domain I	DNA repair protein MutS, domain I
e2o8dB2	B:522-740	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2o8dB3	B:741-840,B:866-1084	Four-helical up-and-down bundle	DNA repair protein MutS, domain III	DNA repair protein MutS, domain III
e2o8dB4	B:1085-1335	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e2o8dA7	A:1-125	Homing endonucleases-like	DNA repair protein MutS, domain I	DNA repair protein MutS, domain I
e2o8dA3	A:126-302	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2o8dA6	A:303-616	Four-helical up-and-down bundle	DNA repair protein MutS, domain III	DNA repair protein MutS, domain III
e2o8dA5	A:617-855	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2o8dB1	B:362-521	Homing endonucleases-like	DNA repair protein MutS, domain I	DNA repair protein MutS, domain I
e2o8dB2	B:522-740	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2o8dB3	B:741-840,B:866-1084	Four-helical up-and-down bundle	DNA repair protein MutS, domain III	DNA repair protein MutS, domain III
e2o8dB4	B:1085-1335	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e2o8dB2 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2o8dA5	B:x,y,z->A:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e2o8dA7	B:x,y,z->A:X,Y,Z	DNA repair protein MutS, domain I	Interaction Interface Pymol
e2o8dB3	B:x,y,z->B:-X-3/4,-Z+1/4,-Y+1/4	DNA repair protein MutS, domain III	Interaction Interface Pymol
e2o8dB2	B:x,y,z->B:-X-3/4,-Z+1/4,-Y+1/4	Ribonuclease H-like	Interaction Interface Pymol
e2o8dB2	B:-X-3/4,-Z+1/4,-Y+1/4->B:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e2o8dB3	B:-X-3/4,-Z+1/4,-Y+1/4->B:x,y,z	DNA repair protein MutS, domain III	Interaction Interface Pymol