Domain ID e2okxB2

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Galactose-binding domain-like
  • T: Galactose-binding domain-like
  • F: Bac_rhamnosid
UID: 001498218
Type: Manual and representative domain
Range: B:197-217,B:396-531
Ligands: CA GOL
PDB: 2okx
PDB Description: Rhamnosidase B
UniProt: Q93RE7
Species: Bacillus sp. GL1

Structure of domain e2okxB2

Domains in the same chain:

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e2okxB1 B:1-196 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2okxB2 B:197-217,B:396-531 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2okxB3 B:218-395 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2okxB4 B:532-877 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e2okxB5 B:878-956 Glycosyl hydrolase domain-like Glycoside hydrolase family 127 middle domain-related Glycoside hydrolase family 127 middle domain-related

Domains in the same PDB:

e2okxA4 A:3-196 jelly-roll Concanavalin A-like Galactose-binding domain-like
e2okxA1 A:197-214,A:403-531 jelly-roll Concanavalin A-like Galactose-binding domain-like
e2okxA6 A:218-395 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2okxA5 A:532-877 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e2okxA3 A:878-956 Glycosyl hydrolase domain-like Glycoside hydrolase family 127 middle domain-related Glycoside hydrolase family 127 middle domain-related
e2okxB1 B:1-196 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2okxB2 B:197-217,B:396-531 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2okxB3 B:218-395 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2okxB4 B:532-877 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e2okxB5 B:878-956 Glycosyl hydrolase domain-like Glycoside hydrolase family 127 middle domain-related Glycoside hydrolase family 127 middle domain-related

Structural contacts of domain e2okxB2 of H-group "Galactose-binding domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2okxA3 B:x,y,z->A:X,Y,Z Glycoside hydrolase family 127 middle domain-related Interaction Interface Pymol
e2okxA1 B:x,y,z->A:X,Y,Z Concanavalin A-like Interaction Interface Pymol
e2okxA5 B:x,y,z->A:X,Y,Z alpha/alpha toroid Interaction Interface Pymol
e2okxA4 B:x,y,z->A:X,Y,Z Concanavalin A-like Interaction Interface Pymol
e2okxA6 B:x,y,z->A:-X+1,Y-1/2,-Z+1/2 Galactose-binding domain-like Interaction Interface Pymol