Domain ID e2otjA1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosomal_L2
UID: 000023904
Type: Automatic domain
Parent: e1vqoA1
Range: A:1-90
Ligands: MG
PDB: 2otj
PDB Description: 50S ribosomal protein L2P
UniProt: P20276
Hsap BLAST neighbor: P62917
Species: Haloarcula marismortui

Structure of domain e2otjA1

Domains in the same chain:

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e2otjA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2otjA2 A:91-237 SH3 SH3 SH3

Domains in the same PDB:

e2otj11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2otj21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e2otj31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2otjA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2otjA2 A:91-237 SH3 SH3 SH3
e2otjB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e2otjC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2otjD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2otjE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2otjE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2otjF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e2otjG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e2otjH1 H:1-163 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e2otjI1 I:71-140 HTH HTH Ribosomal protein L11, C-terminal domain
e2otjJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2otjK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2otjL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2otjM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2otjN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2otjO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2otjP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e2otjP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e2otjQ1 Q:1-95 SH3 SH3 SH3
e2otjR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2otjS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2otjT1 T:1-119 SH3 SH3 SH3
e2otjU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2otjV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2otjW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2otjX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e2otjY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e2otjZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e2otjA1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2otjZ1 A:X,Y,Z->Z:x,y,z Rubredoxin-related Interaction Interface Pymol