Domain ID e2otlC1

Download files:
  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000109891
Type: Automatic domain
Parent: e1vqoC1
Range: C:1-246
Ligands: MG NA
PDB: 2otl
PDB Description: 50S ribosomal protein L4P
UniProt: P12735
Hsap BLAST neighbor: P36578
Species: Haloarcula marismortui

Structure of domain e2otlC1

Domains in the same chain:

Download Pymol

e2otlC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e2otl11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2otl21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e2otl31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2otlA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2otlA2 A:91-237 SH3 SH3 SH3
e2otlB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e2otlC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2otlD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2otlE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2otlE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2otlF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e2otlG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e2otlH1 H:1-163 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e2otlI1 I:71-140 HTH HTH Ribosomal protein L11, C-terminal domain
e2otlJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2otlK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2otlL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2otlM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2otlN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2otlO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2otlP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e2otlP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e2otlQ1 Q:1-95 SH3 SH3 SH3
e2otlR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2otlS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2otlT1 T:1-119 SH3 SH3 SH3
e2otlU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2otlV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2otlW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2otlX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e2otlY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e2otlZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e2otlC1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2otlO1 C:X,Y,Z->O:x,y,z Ribosomal proteins L15p and L18e Interaction Interface Pymol
e2otl11 C:X,Y,Z->1:x,y,z Rubredoxin-related Interaction Interface Pymol
e2otlT1 C:X,Y,Z->T:x,y,z SH3 Interaction Interface Pymol