Domain ID e2p5oC7

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: Unmapped domains
UID: 001157088
Type: Automatic domain
Parent: e1ih7A2
Range: C:733-898
PDB: 2p5o
PDB Description: DNA polymerase
UniProt: Q38087
Species: Enterobacteria phage RB69

Structure of domain e2p5oC7

Domains in the same chain:

e2p5oC5 C:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oC6 C:376-468,C:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oC8 C:469-495,C:541-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2p5oC7 C:733-898 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2p5oA5 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oA6 A:376-468,A:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oA8 A:469-494,A:541-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2p5oA7 A:733-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2p5oB9 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oB2 B:376-468,B:575-734 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oB11 B:469-495,B:541-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2p5oB4 B:733-779,B:861-901 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2p5oC5 C:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oC6 C:376-468,C:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oC8 C:469-495,C:541-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2p5oC7 C:733-898 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2p5oD3 D:1-109,D:191-374 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oD1 D:375-481,D:537-734 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oD2 D:733-779,D:861-896 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2p5oC7 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2p5oA6 C:x,y,z->A:-X,Y-1/2,-Z+1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2p5oB9 C:x,y,z->B:X,Y-1,Z Ribonuclease H-like Interaction Interface Pymol
e2p5oA5 C:x,y,z->A:-X+1,Y-1/2,-Z+1 Ribonuclease H-like Interaction Interface Pymol
e2p5oA7 C:x,y,z->A:-X+1,Y-1/2,-Z+1 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol