Domain ID e2p5oD1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 001711257
Type: Automatic domain
Parent: e1tgoA4
Range: D:375-481,D:537-734
PDB: 2p5o
PDB Description: DNA polymerase
UniProt: Q38087
Hsap BLAST neighbor: P09884
Species: Enterobacteria phage RB69

Structure of domain e2p5oD1

Domains in the same chain:

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e2p5oD3 D:1-109,D:191-374 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oD1 D:375-481,D:537-734 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oD2 D:733-779,D:861-896 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2p5oA5 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oA6 A:376-468,A:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oA8 A:469-494,A:541-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2p5oA7 A:733-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2p5oB9 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oB2 B:376-468,B:575-734 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oB11 B:469-495,B:541-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2p5oB4 B:733-779,B:861-901 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2p5oC5 C:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oC6 C:376-468,C:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oC8 C:469-495,C:541-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2p5oC7 C:733-898 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2p5oD3 D:1-109,D:191-374 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2p5oD1 D:375-481,D:537-734 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2p5oD2 D:733-779,D:861-896 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2p5oD1 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2p5oB4 D:x,y,z->B:X,Y,Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2p5oB2 D:x,y,z->B:X,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol