Domain ID e2pdaB6

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: TPP_enzyme_C
UID: 001874343
Type: Automatic domain
Parent: e2c42A7
Range: B:786-882,B:955-1232
Ligands: CA MG PYR SF4 TPP
PDB: 2pda
PDB Description: PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE)
UniProt: P94692
Species: Desulfovibrio africanus

Structure of domain e2pdaB6

Domains in the same chain:

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e2pdaB4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2pdaB2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2pdaB3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2pdaB1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2pdaB6 B:786-882,B:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2pdaB5 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Domains in the same PDB:

e2pdaA4 A:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2pdaA2 A:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2pdaA3 A:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2pdaA1 A:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2pdaA5 A:786-882,A:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2pdaA6 A:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase
e2pdaB4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2pdaB2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2pdaB3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2pdaB1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2pdaB6 B:786-882,B:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2pdaB5 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Structural contacts of domain e2pdaB6 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2pdaA3 B:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2pdaA5 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2pdaA4 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2pdaA1 B:x,y,z->A:X,Y,Z 4Fe-4S ferredoxin Interaction Interface Pymol
e2pdaB6 B:x,y,z->B:X-1/2,-Y-1/2,-Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2pdaB6 B:X-1/2,-Y-1/2,-Z->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol