Domain ID e2py5B4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_2
UID: 000115167
Type: Automatic domain
Parent: e2py5A4
Range: B:5-187
Ligands: EDO
PDB: 2py5
PDB Description: DNA polymerase
UniProt: P03680
Species: Bacillus phage phi29

Structure of domain e2py5B4

Domains in the same chain:

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e2py5B4 B:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2py5B2 B:188-261,B:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2py5B3 B:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2py5B1 B:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2py5A4 A:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2py5A2 A:188-262,A:424-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2py5A3 A:263-358 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2py5A1 A:359-423 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2py5B4 B:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2py5B2 B:188-261,B:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2py5B3 B:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2py5B1 B:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2py5B4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2py5A2 B:-X+1,Y-1/2,-Z+1->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2py5A4 B:X-1,Y,Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e2py5B4 B:x,y,z->B:X-1,Y,Z Ribonuclease H-like Interaction Interface Pymol
e2py5B4 B:X-1,Y,Z->B:x,y,z Ribonuclease H-like Interaction Interface Pymol