Domain ID e2pyjA2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B_2
UID: 000066116
Type: Automatic domain
Parent: e2py5A2
Range: A:188-261,A:423-574
Ligands: DGT EDO MG MN
PDB: 2pyj
PDB Description: DNA polymerase
UniProt: P03680
Species: Bacillus phage phi29

Structure of domain e2pyjA2

Domains in the same chain:

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e2pyjA4 A:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2pyjA2 A:188-261,A:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pyjA3 A:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2pyjA1 A:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2pyjA4 A:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2pyjA2 A:188-261,A:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pyjA3 A:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2pyjA1 A:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2pyjB4 B:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2pyjB2 B:188-261,B:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pyjB3 B:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2pyjB1 B:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2pyjA2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2pyjB4 A:X,Y,Z->B:x,y,z Ribonuclease H-like Interaction Interface Pymol
e2pyjB3 A:x,y,z->B:X-1,Y,Z insertion domain in bacteriophage phi29 DNA polymerase Interaction Interface Pymol
e2pyjB2 A:x,y,z->B:X-1,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2pyjB2 A:-X+1,Y-1/2,-Z+1->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol