ECOD: domain e2pylA1

Domain ID e2pylA1

A: alpha bundles
X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
F: DNA_pol_B_2

UID:	000057756
Type:	Automatic domain
Parent:	e2py5A1
Range:	A:358-422
Ligands:	TTP
PDB:	2pyl
PDB Description:	DNA polymerase
UniProt:	P03680
Species:	Bacillus phage phi29

Domain
In chain context
In PDB context

Structure of domain e2pylA1

Domains in the same chain:

Download Pymol

e2pylA4	A:5-187	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2pylA2	A:188-261,A:423-574	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2pylA3	A:262-357	insertion domain in bacteriophage phi29 DNA polymerase	insertion domain in bacteriophage phi29 DNA polymerase	insertion domain in bacteriophage phi29 DNA polymerase
e2pylA1	A:358-422	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2pylA4	A:5-187	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2pylA2	A:188-261,A:423-574	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2pylA3	A:262-357	insertion domain in bacteriophage phi29 DNA polymerase	insertion domain in bacteriophage phi29 DNA polymerase	insertion domain in bacteriophage phi29 DNA polymerase
e2pylA1	A:358-422	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2pylA1 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2pylA4	A:X-1/2,-Y+1/2,-Z->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol