ECOD: domain e2qj1A2

Domain ID e2qj1A2

A: alpha complex topology
X: Sigma2 domain-like
H: C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
T: C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
F: Birna_RdRp_C

UID:	000332068
Type:	Automatic domain
Parent:	e2pggA2
Range:	A:698-805
PDB:	2qj1
PDB Description:	Infectious bursal disease virus VP1 polymerase
UniProt:	Q9Q6Q5
Species:	Infectious bursal disease virus

Domain
In chain context
In PDB context

Structure of domain e2qj1A2

Domains in the same chain:

Download Pymol

e2qj1A3	A:27-535	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2qj1A1	A:536-697	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e2qj1A2	A:698-805	Sigma2 domain-like	C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase	C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Domains in the same PDB:

e2qj1A3	A:27-535	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2qj1A1	A:536-697	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e2qj1A2	A:698-805	Sigma2 domain-like	C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase	C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Structural contacts of domain e2qj1A2 of H-group "C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2qj1A3	A:x,y,z->A:-X+Y,Y,-Z+1/2	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e2qj1A3	A:-X+Y,Y,-Z+1/2->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol