| UID: | 001161875 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1iryA1 |
| Range: | B:94-244 |
| Ligands: | ATP |
| PDB: | 2qkm |
| PDB Description: | SPAC19A8.12 PROTEIN |
| UniProt: | O13828 |
| Hsap BLAST neighbor: | Q8IU60 |
| Species: | Schizosaccharomyces pombe |
Structure of domain e2qkmB4
Domains in the same chain:
| e2qkmB3 | B:1-93,B:245-266 | Dcp2 box A domain | Dcp2 box A domain | Dcp2 box A domain |
| e2qkmB4 | B:94-244 | beta-Grasp | Nudix | Nudix |
Domains in the same PDB:
| e2qkmA1 | A:1-127 | PH domain-like | PH domain-like | PH domain-like |
| e2qkmB3 | B:1-93,B:245-266 | Dcp2 box A domain | Dcp2 box A domain | Dcp2 box A domain |
| e2qkmB4 | B:94-244 | beta-Grasp | Nudix | Nudix |
| e2qkmC1 | C:1-123 | PH domain-like | PH domain-like | PH domain-like |
| e2qkmD2 | D:1-93 | Dcp2 box A domain | Dcp2 box A domain | Dcp2 box A domain |
| e2qkmD1 | D:94-233 | beta-Grasp | Nudix | Nudix |
| e2qkmE1 | E:1-127 | PH domain-like | PH domain-like | PH domain-like |
| e2qkmF3 | F:1-93 | Dcp2 box A domain | Dcp2 box A domain | Dcp2 box A domain |
| e2qkmF4 | F:94-266 | beta-Grasp | Nudix | Nudix |
| e2qkmG1 | G:1-127 | PH domain-like | PH domain-like | PH domain-like |
| e2qkmH6 | H:1-93 | Dcp2 box A domain | Dcp2 box A domain | Dcp2 box A domain |
| e2qkmH5 | H:94-175,H:196-235 | beta-Grasp | Nudix | Nudix |
Structural contacts of domain e2qkmB4 of H-group "Nudix":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2qkmD1 | B:X,Y,Z->D:x,y,z | Nudix | Interaction Interface Pymol |
| e2qkmD2 | B:X,Y,Z->D:x,y,z | Dcp2 box A domain | Interaction Interface Pymol |
| e2qkmF4 | B:X,Y,Z->F:x,y,z | Nudix | Interaction Interface Pymol |
| e2qkmD1 | B:X-1,Y,Z->D:x,y,z | Nudix | Interaction Interface Pymol |
| e2qkmC1 | B:X,Y,Z-1->C:x,y,z | PH domain-like | Interaction Interface Pymol |
| e2qkmF4 | B:x,y,z->F:-X,Y-1/2,-Z+1 | Nudix | Interaction Interface Pymol |
| e2qkmE1 | B:x,y,z->E:-X,Y-1/2,-Z+1 | PH domain-like | Interaction Interface Pymol |
