ECOD: domain e2qkmD1

Domain ID e2qkmD1

A: a+b two layers
X: beta-Grasp
H: Nudix
T: Nudix
F: NUDIX

UID:	001308846
Type:	Automatic domain
Parent:	e1iryA1
Range:	D:94-233
PDB:	2qkm
PDB Description:	SPAC19A8.12 PROTEIN
UniProt:	O13828
Hsap BLAST neighbor:	Q8IU60
Species:	Schizosaccharomyces pombe

Domain
In chain context
In PDB context

Structure of domain e2qkmD1

Domains in the same chain:

Download Pymol

e2qkmD2	D:1-93	Dcp2 box A domain	Dcp2 box A domain	Dcp2 box A domain
e2qkmD1	D:94-233	beta-Grasp	Nudix	Nudix

Domains in the same PDB:

e2qkmA1	A:1-127	PH domain-like	PH domain-like	PH domain-like
e2qkmB3	B:1-93,B:245-266	Dcp2 box A domain	Dcp2 box A domain	Dcp2 box A domain
e2qkmB4	B:94-244	beta-Grasp	Nudix	Nudix
e2qkmC1	C:1-123	PH domain-like	PH domain-like	PH domain-like
e2qkmD2	D:1-93	Dcp2 box A domain	Dcp2 box A domain	Dcp2 box A domain
e2qkmD1	D:94-233	beta-Grasp	Nudix	Nudix
e2qkmE1	E:1-127	PH domain-like	PH domain-like	PH domain-like
e2qkmF3	F:1-93	Dcp2 box A domain	Dcp2 box A domain	Dcp2 box A domain
e2qkmF4	F:94-266	beta-Grasp	Nudix	Nudix
e2qkmG1	G:1-127	PH domain-like	PH domain-like	PH domain-like
e2qkmH6	H:1-93	Dcp2 box A domain	Dcp2 box A domain	Dcp2 box A domain
e2qkmH5	H:94-175,H:196-235	beta-Grasp	Nudix	Nudix

Structural contacts of domain e2qkmD1 of H-group "Nudix":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2qkmB3	D:x,y,z->B:X,Y,Z	Dcp2 box A domain	Interaction Interface Pymol
e2qkmB4	D:x,y,z->B:X,Y,Z	Nudix	Interaction Interface Pymol
e2qkmB3	D:x,y,z->B:X-1,Y,Z	Dcp2 box A domain	Interaction Interface Pymol
e2qkmB4	D:x,y,z->B:X-1,Y,Z	Nudix	Interaction Interface Pymol
e2qkmH5	D:x,y,z->H:X-1,Y,Z	Nudix	Interaction Interface Pymol