ECOD: domain e2qqkA3

Domain ID e2qqkA3

A: beta sandwiches
X: jelly-roll
H: Spermadhesin, CUB domain
T: Spermadhesin, CUB domain
F: CUB

UID:	000166272
Type:	Automatic domain
Parent:	e1sfpA1
Range:	A:145-270
Ligands:	NAG
PDB:	2qqk
PDB Description:	Neuropilin-2
UniProt:	O60462
Hsap BLAST neighbor:	O60462
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2qqkA3

Domains in the same chain:

Download Pymol

e2qqkA4	A:27-144	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e2qqkA3	A:145-270	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e2qqkA2	A:271-432	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e2qqkA1	A:433-594	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Domains in the same PDB:

e2qqkA4	A:27-144	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e2qqkA3	A:145-270	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e2qqkA2	A:271-432	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e2qqkA1	A:433-594	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e2qqkH1	H:1-113	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2qqkH2	H:114-220	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2qqkL1	L:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2qqkL2	L:108-211	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2qqkA3 of H-group "Spermadhesin, CUB domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2qqkL2	A:x,y,z->L:X-1/2,Y-1/2,Z-1	Immunoglobulin-related	Interaction Interface Pymol
e2qqkH1	A:-X,Y,-Z-1->H:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2qqkL1	A:-X,Y,-Z-1->L:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2qqkA2	A:-X-1/2,Y-1/2,-Z-2->A:x,y,z	Galactose-binding domain-like	Interaction Interface Pymol