ECOD: domain e2rfkA1

Domain ID e2rfkA1

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: PUA domain
F: PUA

UID:	000021895
Type:	Automatic domain
Parent:	e1r3eA1
Range:	A:253-336
PDB:	2rfk
PDB Description:	Probable tRNA pseudouridine synthase B
UniProt:	Q7LWY0
Hsap BLAST neighbor:	O60832
Species:	Pyrococcus furiosus

Domain
In chain context
In PDB context

Structure of domain e2rfkA1

Domains in the same chain:

Download Pymol

e2rfkA2	A:20-251	Alpha-beta plaits	Pseudouridine synthase	Pseudouridine synthase
e2rfkA1	A:253-336	cradle loop barrel	RIFT-related	PUA domain

Domains in the same PDB:

e2rfkA2	A:20-251	Alpha-beta plaits	Pseudouridine synthase	Pseudouridine synthase
e2rfkA1	A:253-336	cradle loop barrel	RIFT-related	PUA domain
e2rfkB1	B:4-55	Rubredoxin-like	Nucleolar RNA-binding protein Nop10-like	Nucleolar RNA-binding protein Nop10-like
e2rfkC1	C:1-73	cradle loop barrel	RIFT-related	Alanine racemase-C

Structural contacts of domain e2rfkA1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2rfkA2	A:X-1/2,-Y+1/2,-Z+3/4->A:x,y,z	Pseudouridine synthase	Interaction Interface Pymol
e2rfkC1	A:x,y,z->C:X-1/2,-Y+1/2,-Z+3/4	RIFT-related	Interaction Interface Pymol