ECOD: domain e2rfkB1

Domain ID e2rfkB1

A: few secondary structure elements
X: Rubredoxin-like
H: Nucleolar RNA-binding protein Nop10-like
T: Nucleolar RNA-binding protein Nop10-like
F: Nop10p

UID:	000089271
Type:	Automatic domain
Parent:	e2aqaA1
Range:	B:4-55
Ligands:	ZN
PDB:	2rfk
PDB Description:	Ribosome biogenesis protein Nop10
UniProt:	Q8U1R4
Species:	Pyrococcus furiosus

Domain
In chain context
In PDB context

Structure of domain e2rfkB1

Domains in the same chain:

Download Pymol

e2rfkB1	B:4-55	Rubredoxin-like	Nucleolar RNA-binding protein Nop10-like	Nucleolar RNA-binding protein Nop10-like

Domains in the same PDB:

e2rfkA2	A:20-251	Alpha-beta plaits	Pseudouridine synthase	Pseudouridine synthase
e2rfkA1	A:253-336	cradle loop barrel	RIFT-related	PUA domain
e2rfkB1	B:4-55	Rubredoxin-like	Nucleolar RNA-binding protein Nop10-like	Nucleolar RNA-binding protein Nop10-like
e2rfkC1	C:1-73	cradle loop barrel	RIFT-related	Alanine racemase-C

Structural contacts of domain e2rfkB1 of H-group "Nucleolar RNA-binding protein Nop10-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2rfkA2	B:x,y,z->A:X,Y,Z	Pseudouridine synthase	Interaction Interface Pymol
e2rfkB1	B:x,y,z->B:-Y,-X,-Z+1/2	Nucleolar RNA-binding protein Nop10-like	Interaction Interface Pymol
e2rfkB1	B:-Y,-X,-Z+1/2->B:x,y,z	Nucleolar RNA-binding protein Nop10-like	Interaction Interface Pymol
e2rfkA2	B:x,y,z->A:-Y,-X,-Z+1/2	Pseudouridine synthase	Interaction Interface Pymol