Domain ID e2uubD1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001552896
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: MG ZN
PDB: 2uub
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species:

Structure of domain e2uubD1

Domains in the same chain:

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e2uubD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e2uubB1 B:7-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e2uubC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2uubC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2uubD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2uubE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2uubE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2uubF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2uubG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2uubH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2uubH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2uubI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2uubJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2uubK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2uubL1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2uubM1 M:2-126 HhH/H2TH H2TH H2TH
e2uubN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2uubO1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2uubP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2uubQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2uubR1 R:19-88 HTH HTH tri-helical
e2uubS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e2uubT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2uubD1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2uubH1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e2uubE1 D:X,Y,Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol
e2uubE2 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol