ECOD: domain e2v3cD3

Domain ID e2v3cD3

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: SRP54

UID:	000326741
Type:	Automatic domain
Parent:	e1ls1A2
Range:	D:90-299
PDB:	2v3c
PDB Description:	SIGNAL RECOGNITION 54 KDA PROTEIN
UniProt:	Q57565
Hsap BLAST neighbor:	P61011
Species:	Methanocaldococcus jannaschii

Domain
In chain context
In PDB context

Structure of domain e2v3cD3

Domains in the same chain:

Download Pymol

e2v3cD2	D:2-89	Domain of the SRP/SRP receptor G proteins-like	Domain of the SRP/SRP receptor G-proteins	Domain of the SRP/SRP receptor G-proteins
e2v3cD3	D:90-299	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2v3cD1	D:300-339,D:365-428	HTH	HTH	tri-helical

Domains in the same PDB:

e2v3cA1	A:1-87	HTH	HTH	Putative DNA-binding domain
e2v3cB1	B:1-87	HTH	HTH	Putative DNA-binding domain
e2v3cC5	C:2-88	Domain of the SRP/SRP receptor G proteins-like	Domain of the SRP/SRP receptor G-proteins	Domain of the SRP/SRP receptor G-proteins
e2v3cC4	C:89-301	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2v3cC6	C:302-341,C:365-428	HTH	HTH	tri-helical
e2v3cD2	D:2-89	Domain of the SRP/SRP receptor G proteins-like	Domain of the SRP/SRP receptor G-proteins	Domain of the SRP/SRP receptor G-proteins
e2v3cD3	D:90-299	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2v3cD1	D:300-339,D:365-428	HTH	HTH	tri-helical

Structural contacts of domain e2v3cD3 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2v3cC6	D:X-1,Y,Z->C:x,y,z	HTH	Interaction Interface Pymol
e2v3cC4	D:X-1,Y,Z->C:x,y,z	P-loop domains-related	Interaction Interface Pymol
e2v3cC5	D:-X-1,Y-1/2,-Z+7/2->C:x,y,z	Domain of the SRP/SRP receptor G-proteins	Interaction Interface Pymol
e2v3cC4	D:x,y,z->C:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e2v3cA1	D:X-1/2,-Y-1/2,-Z+3->A:x,y,z	HTH	Interaction Interface Pymol
e2v3cB1	D:X-1/2,-Y+1/2,-Z+3->B:x,y,z	HTH	Interaction Interface Pymol