Domain ID e2v48R1

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: tri-helical
  • F: Ribosomal_S18
UID: 000045116
Type: Automatic domain
Parent: e2uubR1
Range: R:19-88
PDB: 2v48
PDB Description:
Hsap BLAST neighbor: Q9Y3D5
Species:

Structure of domain e2v48R1

Domains in the same chain:

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e2v48R1 R:19-88 HTH HTH tri-helical

Domains in the same PDB:

e2v48C2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2v48C1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2v48E1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2v48E2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2v48F1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2v48G1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2v48H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2v48H2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2v48J1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2v48K1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2v48L1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2v48N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2v48O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2v48P1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2v48R1 R:19-88 HTH HTH tri-helical
e2v48T1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e2v48Y1 Y:3-185 RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF

Structural contacts of domain e2v48R1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2v48F1 R:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol
e2v48K1 R:x,y,z->K:X,Y,Z Ribonuclease H-like Interaction Interface Pymol