Domain ID e2v4961

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L33
UID: 000088949
Type: Automatic domain
Parent: e2j0161
Range: 6:9-53
PDB: 2v49
PDB Description:
Species:

Structure of domain e2v4961

Domains in the same chain:

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e2v4961 6:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e2v4901 0:1-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2v4911 1:8-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e2v4921 2:12-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2v4931 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2v4941 4:1-50 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e2v4951 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2v4961 6:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2v4971 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2v4981 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2v49C1 C:18-66,C:159-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e2v49C2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e2v49D1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2v49D2 D:127-273 SH3 SH3 SH3
e2v49F1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2v49G1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2v49H1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2v49H2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2v49I2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2v49I1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e2v49N1 N:1-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2v49O1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2v49R1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2v49U1 U:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2v49V1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2v49W1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2v49X1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2v49Y2 Y:2-102 SH3 SH3 SH3
e2v49Z1 Z:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2v49Z2 Z:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e2v4961 of H-group "Rubredoxin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2v4981 6:X,Y,Z->8:x,y,z Ribosomal protein L35p Interaction Interface Pymol