ECOD: domain e2vakD1

Domain ID e2vakD1

A: alpha complex topology
X: Core protein VP6
H: Core protein VP6
T: Core protein VP6
F: Sigma_1_2

UID:	000347966
Type:	Automatic domain
Parent:	e3iylU1
Range:	D:5-426
Ligands:	SO4
PDB:	2vak
PDB Description:	SIGMA A
UniProt:	Q9E6F8
Species:	Avian orthoreovirus

Domain
In chain context
In PDB context

Structure of domain e2vakD1

Domains in the same chain:

Download Pymol

e2vakD1	D:5-426	Core protein VP6	Core protein VP6	Core protein VP6

Domains in the same PDB:

e2vakA1	A:4-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakB1	B:5-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakC1	C:10-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakD1	D:5-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakE1	E:5-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakF1	F:10-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakG1	G:11-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakH1	H:5-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakI1	I:4-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakJ1	J:10-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakK1	K:4-426	Core protein VP6	Core protein VP6	Core protein VP6
e2vakL1	L:4-426	Core protein VP6	Core protein VP6	Core protein VP6

Structural contacts of domain e2vakD1 of H-group "Core protein VP6":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vakE1	D:X,Y,Z->E:x,y,z	Core protein VP6	Interaction Interface Pymol
e2vakG1	D:X-1,Y-1,Z->G:x,y,z	Core protein VP6	Interaction Interface Pymol
e2vakI1	D:X,Y,Z->I:x,y,z	Core protein VP6	Interaction Interface Pymol
e2vakB1	D:x,y,z->B:X,Y,Z	Core protein VP6	Interaction Interface Pymol