Domain ID e2vdiG2

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: RuBisCO_large
UID: 000351818
Type: Automatic domain
Parent: e5rubA2
Range: G:151-475
Ligands: CAP EDO MG
PDB: 2vdi
PDB Description: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
UniProt: P00877
Species: Chlamydomonas reinhardtii

Structure of domain e2vdiG2

Domains in the same chain:

e2vdiG1 G:10-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiG2 G:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e2vdiA1 A:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiA2 A:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdiB1 B:8-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiB2 B:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdiC1 C:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiC2 C:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdiD1 D:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiD2 D:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdiE1 E:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiE2 E:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdiF1 F:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiF2 F:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdiG1 G:10-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiG2 G:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdiH1 H:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdiH2 H:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdiI1 I:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdiJ1 J:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdiK1 K:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdiL1 L:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdiM1 M:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdiN1 N:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdiO1 O:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdiP1 P:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit

Structural contacts of domain e2vdiG2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vdiH1 G:X,Y,Z->H:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2vdiH2 G:X,Y,Z->H:x,y,z TIM barrels Interaction Interface Pymol
e2vdiO1 G:X,Y,Z->O:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e2vdiM1 G:X,Y,Z->M:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e2vdiB1 G:x,y,z->B:X,Y,Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2vdiA2 G:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e2vdiE1 G:x,y,z->E:X,Y,Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2vdiE2 G:x,y,z->E:X,Y,Z TIM barrels Interaction Interface Pymol