ECOD: domain e2vdkA1

Domain ID e2vdkA1

A: beta duplicates or obligate multimers
X: beta-propeller-like
H: beta-propeller
T: 7-bladed
F: FG-GAP

UID:	000347646
Type:	Automatic domain
Parent:	e1tyeA1
Range:	A:1-452
Ligands:	CA GOL NAG
PDB:	2vdk
PDB Description:	INTEGRIN ALPHA-IIB
UniProt:	P08514
Hsap BLAST neighbor:	P08514
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2vdkA1

Domains in the same chain:

Download Pymol

e2vdkA1	A:1-452	beta-propeller-like	beta-propeller	7-bladed

Domains in the same PDB:

e2vdkA1	A:1-452	beta-propeller-like	beta-propeller	7-bladed
e2vdkB1	B:1-57	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e2vdkB2	B:58-106,B:355-440	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkB3	B:107-354	HAD domain-like	HAD domain-related	vWA-like
e2vdkH2	H:1-119	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkH1	H:121-221	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkL1	L:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkL2	L:108-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2vdkA1 of H-group "beta-propeller":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vdkB3	A:X,Y,Z->B:x,y,z	HAD domain-related	Interaction Interface Pymol
e2vdkA1	A:x,y,z->A:-X+2,-X+Y+1,-Z+2/3	beta-propeller	Interaction Interface Pymol
e2vdkA1	A:-X+2,-X+Y+1,-Z+2/3->A:x,y,z	beta-propeller	Interaction Interface Pymol
e2vdkB2	A:X-Y,-Y,-Z+4/3->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2vdkB1	A:X-Y,-Y,-Z+4/3->B:x,y,z	Trefoil/Plexin domain-like	Interaction Interface Pymol