ECOD: domain e2vdkB3

Domain ID e2vdkB3

A: a/b three-layered sandwiches
X: HAD domain-like
H: HAD domain-related
T: vWA-like
F: Integrin_beta

UID:	001667173
Type:	Automatic domain
Parent:	e1tyeB3
Range:	B:107-354
Ligands:	CA CAC GOL MG NAG
PDB:	2vdk
PDB Description:	INTEGRIN BETA-3
UniProt:	P05106
Hsap BLAST neighbor:	P05106
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2vdkB3

Domains in the same chain:

Download Pymol

e2vdkB1	B:1-57	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e2vdkB2	B:58-106,B:355-440	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkB3	B:107-354	HAD domain-like	HAD domain-related	vWA-like

Domains in the same PDB:

e2vdkA1	A:1-452	beta-propeller-like	beta-propeller	7-bladed
e2vdkB1	B:1-57	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e2vdkB2	B:58-106,B:355-440	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkB3	B:107-354	HAD domain-like	HAD domain-related	vWA-like
e2vdkH2	H:1-119	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkH1	H:121-221	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkL1	L:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdkL2	L:108-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2vdkB3 of H-group "HAD domain-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vdkA1	B:x,y,z->A:X,Y,Z	beta-propeller	Interaction Interface Pymol