Domain ID e2vk1A1

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: DHS-like NAD/FAD-binding domain
  • F: TPP_enzyme_M
UID: 000170055
Type: Automatic domain
Parent: e2ez9A1
Range: A:181-359
Ligands: PYR
PDB: 2vk1
PDB Description: PYRUVATE DECARBOXYLASE ISOZYME 1
UniProt: P06169
Species: Saccharomyces cerevisiae

Structure of domain e2vk1A1

Domains in the same chain:

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e2vk1A2 A:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk1A1 A:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk1A3 A:360-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e2vk1A2 A:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk1A1 A:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk1A3 A:360-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk1B2 B:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk1B1 B:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk1B3 B:360-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk1C2 C:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk1C1 C:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk1C3 C:360-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk1D2 D:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk1D1 D:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk1D3 D:360-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e2vk1A1 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vk1B2 A:X,Y,Z->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2vk1B1 A:-X+1,Y-1/2,-Z->B:x,y,z Rossmann-related Interaction Interface Pymol
e2vk1D1 A:X,Y,Z->D:x,y,z Rossmann-related Interaction Interface Pymol