Domain ID e2vqfE2

Download files:
  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000341039
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-155
Ligands: K MG
PDB: 2vqf
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e2vqfE2

Domains in the same chain:

Download Pymol

e2vqfE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2vqfE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e2vqfB1 B:7-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e2vqfC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2vqfC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2vqfD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2vqfE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2vqfE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vqfF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2vqfG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2vqfH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2vqfH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2vqfI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vqfJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2vqfK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vqfL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vqfM1 M:2-126 HhH/H2TH H2TH H2TH
e2vqfN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2vqfO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2vqfP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2vqfQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vqfR1 R:19-88 HTH HTH tri-helical
e2vqfS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e2vqfT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2vqfE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vqfH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e2vqfH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e2vqfD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e2vqfE2 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2vqfE1 E:x,y,z->E:Y,X,-Z dsRNA-binding domain-like Interaction Interface Pymol
e2vqfE1 E:Y,X,-Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol
e2vqfE2 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol