ECOD: domain e2vtdA2

Domain ID e2vtdA2

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Mur_ligase_M

UID:	000353084
Type:	Automatic domain
Parent:	e1j6uA2
Range:	A:94-297
Ligands:	LKM SO4
PDB:	2vtd
PDB Description:	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
UniProt:	P14900
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e2vtdA2

Domains in the same chain:

Download Pymol

e2vtdA1	A:1-93	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2vtdA2	A:94-297	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2vtdA3	A:298-440	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e2vtdA1	A:1-93	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2vtdA2	A:94-297	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2vtdA3	A:298-440	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e2vtdA2 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vtdA3	A:x,y,z->A:-Y,X-1,Z+1/4	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e2vtdA2	A:x,y,z->A:-Y,X-1,Z+1/4	P-loop domains-related	Interaction Interface Pymol
e2vtdA2	A:-Y,X-1,Z+1/4->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e2vtdA1	A:x,y,z->A:-Y,X,Z+1/4	Rossmann-related	Interaction Interface Pymol