ECOD: domain e2vtdA3

Domain ID e2vtdA3

A: a/b three-layered sandwiches
X: MurD-like peptide ligases, peptide-binding domain
H: MurD-like peptide ligases, peptide-binding domain
T: MurD-like peptide ligases, peptide-binding domain
F: Mur_ligase_C

UID:	000353085
Type:	Automatic domain
Parent:	e1e8cA2
Range:	A:298-440
Ligands:	LKM SO4
PDB:	2vtd
PDB Description:	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
UniProt:	P14900
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e2vtdA3

Domains in the same chain:

Download Pymol

e2vtdA1	A:1-93	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2vtdA2	A:94-297	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2vtdA3	A:298-440	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e2vtdA1	A:1-93	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2vtdA2	A:94-297	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2vtdA3	A:298-440	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e2vtdA3 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vtdA2	A:-Y,X-1,Z+1/4->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e2vtdA1	A:x,y,z->A:X,Y-1,Z	Rossmann-related	Interaction Interface Pymol
e2vtdA1	A:-Y-1,X,Z+1/4->A:x,y,z	Rossmann-related	Interaction Interface Pymol