Domain ID e2vwjA3

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B
UID: 000057815
Type: Automatic domain
Parent: e1tgoA3
Range: A:610-756
Ligands: K
PDB: 2vwj
PDB Description: DNA POLYMERASE
UniProt: P56689
Hsap BLAST neighbor: P09884
Species: Thermococcus gorgonarius

Structure of domain e2vwjA3

Domains in the same chain:

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e2vwjA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vwjA5 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2vwjA6 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vwjA4 A:348-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2vwjA2 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2vwjA3 A:610-756 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2vwjA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vwjA5 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2vwjA6 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vwjA4 A:348-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2vwjA2 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2vwjA3 A:610-756 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2vwjA3 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vwjA6 A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e2vwjA3 A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2vwjA3 A:X-1/2,-Y+1/2,-Z+1/2->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2vwjA4 A:X-1/2,-Y+1/2,-Z+1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol