Domain ID e2w55F4

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  • A: a+b two layers
  • X: MocoBD/DmpA-related
  • H: MocoBD/DmpA-related
  • T: Molybdenum cofactor-binding domain
  • F: MoCoBD_1
UID: 001874997
Type: Automatic domain
Parent: e1v97A7
Range: F:125-377
Ligands: BA FES HPA XAX
PDB: 2w55
PDB Description: XANTHINE DEHYDROGENASE
UniProt: O54051
Hsap BLAST neighbor: P47989
Species: Rhodobacter capsulatus

Structure of domain e2w55F4

Domains in the same chain:

e2w55F3 F:2-124 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e2w55F4 F:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e2w55F2 F:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain

Domains in the same PDB:

e2w55A4 A:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e2w55A3 A:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e2w55A1 A:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e2w55A2 A:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e2w55B3 B:2-124 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e2w55B4 B:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e2w55B2 B:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e2w55C4 C:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e2w55C3 C:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e2w55C1 C:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e2w55C2 C:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e2w55D3 D:2-124 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e2w55D4 D:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e2w55D2 D:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e2w55E4 E:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e2w55E3 E:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e2w55E1 E:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e2w55E2 E:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e2w55F3 F:2-124 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e2w55F4 F:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e2w55F2 F:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e2w55G4 G:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e2w55G3 G:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e2w55G1 G:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e2w55G2 G:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e2w55H2 H:2-125 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e2w55H4 H:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e2w55H3 H:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain

Structural contacts of domain e2w55F4 of H-group "MocoBD/DmpA-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2w55E4 F:x,y,z->E:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e2w55E1 F:x,y,z->E:X,Y,Z FAD-binding domain Interaction Interface Pymol
e2w55E3 F:x,y,z->E:X,Y,Z CO dehydrogenase ISP C-domain like Interaction Interface Pymol
e2w55H3 F:X,Y,Z->H:x,y,z MocoBD/DmpA-related Interaction Interface Pymol
e2w55H4 F:X,Y,Z->H:x,y,z MocoBD/DmpA-related Interaction Interface Pymol
e2w55H2 F:X,Y,Z->H:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2w55D2 F:X-1,Y-1,Z-1->D:x,y,z MocoBD/DmpA-related Interaction Interface Pymol