Domain ID e2wdgE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000134370
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-155
Ligands: MG
PDB: 2wdg
PDB Description:
Species:

Structure of domain e2wdgE2

Domains in the same chain:

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e2wdgE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2wdgE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e2wdgC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2wdgC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2wdgE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2wdgE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2wdgF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2wdgG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2wdgH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2wdgH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2wdgJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2wdgK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2wdgL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2wdgN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2wdgO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2wdgP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2wdgR1 R:19-88 HTH HTH tri-helical
e2wdgT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2wdgE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wdgH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e2wdgH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol