Domain ID e2wdiN1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 000134396
Type: Automatic domain
Parent: e4v19N1
Range: N:1-139
PDB: 2wdi
PDB Description:
Hsap BLAST neighbor: Q9BYD1
Species:

Structure of domain e2wdiN1

Domains in the same chain:

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e2wdiN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e2wdi01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2wdi11 1:3-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e2wdi21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2wdi31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2wdi41 4:36-66 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e2wdi51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2wdi61 6:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2wdi71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2wdi81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2wdi91 9:2-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2wdiC1 C:18-66,C:159-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e2wdiC2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e2wdiD2 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2wdiD1 D:127-273 SH3 SH3 SH3
e2wdiF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2wdiG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2wdiH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2wdiH2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2wdiI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2wdiI1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e2wdiN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2wdiO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2wdiR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2wdiU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2wdiV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2wdiW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2wdiX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2wdiY1 Y:2-102 SH3 SH3 SH3
e2wdiZ1 Z:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2wdiZ2 Z:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e2wdiN1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wdiU1 N:X,Y,Z->U:x,y,z Ribosomal protein L20 Interaction Interface Pymol
e2wdiU1 N:x,y,z->E:X,Y,Z Ribosomal protein L20 Interaction Interface Pymol
e2wdiV1 N:X,Y,Z->V:x,y,z Ribosomal protein L21p Interaction Interface Pymol