Domain ID e2wdjF1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000361185
Type: Automatic domain
Parent: e1dmgA1
Range: F:1-208
PDB: 2wdj
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e2wdjF1

Domains in the same chain:

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e2wdjF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e2wdj01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2wdj11 1:3-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e2wdj21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2wdj31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2wdj41 4:36-66 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e2wdj51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2wdj61 6:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2wdj71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2wdj81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2wdj91 9:2-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2wdjC1 C:18-66,C:159-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e2wdjC2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e2wdjD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2wdjD2 D:127-273 SH3 SH3 SH3
e2wdjF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2wdjG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2wdjH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2wdjH2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2wdjI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2wdjI1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e2wdjN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2wdjO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2wdjR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2wdjU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2wdjV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2wdjW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2wdjX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2wdjY1 Y:2-102 SH3 SH3 SH3
e2wdjZ1 Z:3-93 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2wdjZ2 Z:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e2wdjF1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 F:X,Y,Z->P:x,y,z Ribosomal protein L4 Interaction Interface Pymol