Domain ID e2wdn61

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L33
UID: 000361290
Type: Automatic domain
Parent: e2j0161
Range: 6:9-53
PDB: 2wdn
PDB Description:
Species:

Structure of domain e2wdn61

Domains in the same chain:

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e2wdn61 6:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e2wdn01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2wdn11 1:3-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e2wdn21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2wdn31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2wdn41 4:36-66 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e2wdn51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2wdn61 6:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2wdn71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2wdn81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2wdn91 9:2-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2wdnC1 C:18-66,C:159-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e2wdnC2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e2wdnD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2wdnD2 D:127-273 SH3 SH3 SH3
e2wdnF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2wdnG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2wdnH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2wdnH2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2wdnI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2wdnI1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e2wdnN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2wdnO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2wdnR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2wdnU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2wdnV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2wdnW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2wdnX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2wdnY1 Y:2-102 SH3 SH3 SH3
e2wdnZ1 Z:3-93 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2wdnZ2 Z:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e2wdn61 of H-group "Rubredoxin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wdn81 6:X,Y,Z->8:x,y,z Ribosomal protein L35p Interaction Interface Pymol