Domain ID e2wdqJ1

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  • A: alpha arrays
  • X: alpha-helical ferredoxin-like
  • H: alpha-helical ferredoxin
  • T: alpha-helical ferredoxin
  • F: Fer4_17
UID: 000370964
Type: Automatic domain
Parent: e1nekB1
Range: J:107-238
Ligands: CBE F3S HEM SF4
PDB: 2wdq
PDB Description: SUCCINATE DEHYDROGENASE IRON-SULFUR SUBUNIT
UniProt: P07014
Hsap BLAST neighbor: P21912
Species: Escherichia coli

Structure of domain e2wdqJ1

Domains in the same chain:

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e2wdqJ2 J:1-106 beta-Grasp Ubiquitin-related Ubiquitin-like
e2wdqJ1 J:107-238 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin

Domains in the same PDB:

e2wdqA3 A:1-235,A:356-450 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2wdqA2 A:236-355 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e2wdqA4 A:451-588 Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e2wdqB2 B:1-106 beta-Grasp Ubiquitin-related Ubiquitin-like
e2wdqB1 B:107-238 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2wdqC1 C:8-128 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdqD1 D:11-115 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdqE3 E:1-235,E:356-450 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2wdqE2 E:236-355 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e2wdqE4 E:451-588 Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e2wdqF2 F:1-106 beta-Grasp Ubiquitin-related Ubiquitin-like
e2wdqF1 F:107-238 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2wdqG1 G:8-128 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdqH1 H:11-115 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdqI3 I:1-235,I:356-450 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2wdqI2 I:236-355 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e2wdqI4 I:451-588 Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e2wdqJ2 J:1-106 beta-Grasp Ubiquitin-related Ubiquitin-like
e2wdqJ1 J:107-238 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2wdqK1 K:8-128 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdqL1 L:11-115 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits

Structural contacts of domain e2wdqJ1 of H-group "alpha-helical ferredoxin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wdqI2 J:x,y,z->I:X,Y,Z Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Interaction Interface Pymol
e2wdqI3 J:x,y,z->I:X,Y,Z Rossmann-related Interaction Interface Pymol
e2wdqK1 J:X,Y,Z->K:x,y,z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e2wdqL1 J:X,Y,Z->L:x,y,z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e2wdqA3 J:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e2wdqD1 J:X,Y,Z->D:x,y,z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e2wdqF1 J:x,y,z->F:X,Y,Z alpha-helical ferredoxin Interaction Interface Pymol