Domain ID e2wdvJ1

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  • A: alpha arrays
  • X: alpha-helical ferredoxin-like
  • H: alpha-helical ferredoxin
  • T: alpha-helical ferredoxin
  • F: Fer4_17
UID: 000371006
Type: Automatic domain
Parent: e1nekB1
Range: J:107-238
Ligands: F3S HEM SF4
PDB: 2wdv
PDB Description: SUCCINATE DEHYDROGENASE IRON-SULFUR SUBUNIT
UniProt: P07014
Hsap BLAST neighbor: P21912
Species: Escherichia coli

Structure of domain e2wdvJ1

Domains in the same chain:

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e2wdvJ2 J:1-106 beta-Grasp Ubiquitin-related Ubiquitin-like
e2wdvJ1 J:107-238 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin

Domains in the same PDB:

e2wdvA3 A:1-235,A:356-450 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2wdvA2 A:236-355 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e2wdvA4 A:451-588 Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e2wdvB2 B:1-106 beta-Grasp Ubiquitin-related Ubiquitin-like
e2wdvB1 B:107-238 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2wdvC1 C:8-128 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdvD1 D:11-115 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdvE2 E:1-236,E:366-442 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2wdvE3 E:236-365 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e2wdvE1 E:443-588 Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e2wdvF2 F:1-106 beta-Grasp Ubiquitin-related Ubiquitin-like
e2wdvF1 F:107-238 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2wdvG1 G:8-128 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdvH1 H:11-115 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdvI2 I:1-236,I:366-442 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2wdvI3 I:236-365 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
e2wdvI1 I:443-588 Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
e2wdvJ2 J:1-106 beta-Grasp Ubiquitin-related Ubiquitin-like
e2wdvJ1 J:107-238 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2wdvK1 K:8-128 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits
e2wdvL1 L:11-115 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits

Structural contacts of domain e2wdvJ1 of H-group "alpha-helical ferredoxin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wdvI2 J:x,y,z->I:X,Y,Z Rossmann-related Interaction Interface Pymol
e2wdvK1 J:X,Y,Z->K:x,y,z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e2wdvL1 J:X,Y,Z->L:x,y,z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e2wdvA3 J:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e2wdvD1 J:X,Y,Z->D:x,y,z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol