Domain ID e2wjvB5

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  • A: few secondary structure elements
  • X: RING/U-box-like
  • H: RING/U-box-like
  • T: RING/U-box
  • F: UPF1_Zn_bind
UID: 001758536
Type: Automatic domain
Parent: e2wjvA2
Range: B:180-277
Ligands: ZN
PDB: 2wjv
PDB Description: REGULATOR OF NONSENSE TRANSCRIPTS 1
UniProt: Q92900
Hsap BLAST neighbor: Q92900
Species: Homo sapiens

Structure of domain e2wjvB5

Domains in the same chain:

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e2wjvB1 B:116-179 RING/U-box-like RING/U-box-like RING/U-box
e2wjvB5 B:180-277 RING/U-box-like RING/U-box-like RING/U-box
e2wjvB2 B:276-322,B:415-699 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wjvB4 B:323-414 cradle loop barrel RIFT-related Alanine racemase-C
e2wjvB3 B:700-913 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e2wjvA1 A:116-179 RING/U-box-like RING/U-box-like RING/U-box
e2wjvA2 A:180-280 RING/U-box-like RING/U-box-like RING/U-box
e2wjvA3 A:286-322,A:415-699 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wjvA4 A:323-414 cradle loop barrel RIFT-related Alanine racemase-C
e2wjvA5 A:700-911 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wjvB1 B:116-179 RING/U-box-like RING/U-box-like RING/U-box
e2wjvB5 B:180-277 RING/U-box-like RING/U-box-like RING/U-box
e2wjvB2 B:276-322,B:415-699 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wjvB4 B:323-414 cradle loop barrel RIFT-related Alanine racemase-C
e2wjvB3 B:700-913 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wjvD1 D:1102-1128,D:1167-1198 C-terminal region of nonsense mediated decay factor UPF2 C-terminal region of nonsense mediated decay factor UPF2 C-terminal region of nonsense mediated decay factor UPF2
e2wjvE1 E:1102-1129,E:1167-1198 C-terminal region of nonsense mediated decay factor UPF2 C-terminal region of nonsense mediated decay factor UPF2 C-terminal region of nonsense mediated decay factor UPF2

Structural contacts of domain e2wjvB5 of H-group "RING/U-box-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wjvA5 B:x,y,z->A:X-1,Y,Z-1 P-loop domains-related Interaction Interface Pymol
e2wjvA3 B:x,y,z->A:X-1,Y,Z-1 P-loop domains-related Interaction Interface Pymol
e2wjvA3 B:x,y,z->A:-X,Y-1/2,-Z P-loop domains-related Interaction Interface Pymol
e2wjvB5 B:x,y,z->B:-X-1,Y-1/2,-Z-1 RING/U-box-like Interaction Interface Pymol
e2wjvB5 B:-X-1,Y-1/2,-Z-1->B:x,y,z RING/U-box-like Interaction Interface Pymol