ECOD: domain e2wp8B1

Domain ID e2wp8B1

A: a+b two layers
X: Ribosomal protein S5 domain 2-like
H: Ribosomal protein S5 domain 2-like
T: Ribosomal protein S5 domain 2-like
F: RNase_PH

UID:	000137054
Type:	Automatic domain
Parent:	e1e3hA5
Range:	B:3-153
Ligands:	CL
PDB:	2wp8
PDB Description:	EXOSOME COMPLEX COMPONENT SKI6
UniProt:	P46948
Hsap BLAST neighbor:	Q9NPD3
Species:	Saccharomyces cerevisiae

Domain
In chain context
In PDB context

Structure of domain e2wp8B1

Domains in the same chain:

Download Pymol

e2wp8B1	B:3-153	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2wp8B2	B:154-239	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2

Domains in the same PDB:

e2wp8A4	A:7-84,A:107-187	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2wp8A3	A:188-303	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2wp8B1	B:3-153	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2wp8B2	B:154-239	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2wp8J5	J:36-234	HAD domain-like	HAD domain-related	PIN domain-like
e2wp8J3	J:252-399	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2wp8J2	J:400-494	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2wp8J1	J:495-910	OB-fold	RNB domain-like	RNB domain-like
e2wp8J4	J:911-1001	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Structural contacts of domain e2wp8B1 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2wp8J5	B:X,Y,Z->J:x,y,z	HAD domain-related	Interaction Interface Pymol
e2wp8J2	B:X,Y,Z->J:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e2wp8A3	B:x,y,z->A:X,Y,Z	Ribonuclease PH domain 2	Interaction Interface Pymol
e2wp8J1	B:x,y,z->J:-X-1,Y-1/2,-Z+1/2	RNB domain-like	Interaction Interface Pymol
e2wp8J3	B:x,y,z->J:X-1/2,-Y-1/2,-Z+1	Nucleic acid-binding proteins	Interaction Interface Pymol