ECOD: domain e2wp8J5

Domain ID e2wp8J5

A: a/b three-layered sandwiches
X: HAD domain-like
H: HAD domain-related
T: PIN domain-like
F: PIN_4

UID:	001312463
Type:	Manual and representative domain
Range:	J:36-234
PDB:	2wp8
PDB Description:	EXOSOME COMPLEX EXONUCLEASE DIS3
UniProt:	Q08162
Hsap BLAST neighbor:	Q9Y2L1
Species:	Saccharomyces cerevisiae

Domain
In chain context
In PDB context

Structure of domain e2wp8J5

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e2wp8A4	A:7-84,A:107-187	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2wp8A3	A:188-303	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2wp8B1	B:3-153	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2wp8B2	B:154-239	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2wp8J5	J:36-234	HAD domain-like	HAD domain-related	PIN domain-like
e2wp8J3	J:252-399	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2wp8J2	J:400-494	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2wp8J1	J:495-910	OB-fold	RNB domain-like	RNB domain-like
e2wp8J4	J:911-1001	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Structural contacts of domain e2wp8J5 of H-group "HAD domain-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2wp8B2	J:x,y,z->B:X,Y,Z	Ribonuclease PH domain 2	Interaction Interface Pymol
e2wp8B1	J:x,y,z->B:X,Y,Z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e2wp8J1	J:-X-1/2,-Y-1,Z-1/2->J:x,y,z	RNB domain-like	Interaction Interface Pymol
e2wp8A3	J:-X-1/2,-Y-1,Z-1/2->A:x,y,z	Ribonuclease PH domain 2	Interaction Interface Pymol